Index

_

__init__() (wings.models.cpu.beetle.Beetle method) (wings.models.cpu.environment.Environment method) (wings.models.cpu.reproduction.Reproduction method)

A

age (wings.models.cpu.beetle.Beetle attribute)

append() (wings.models.gpu_abm.PopulationState method)

B

batch_mating_events() (wings.models.cpu.reproduction.Reproduction method) Beetle (class in wings.models.cpu.beetle)

bin_delta_p() (in module wings.analysis.plot_delta_p) bootstrap_ci() (in module wings.analysis.stats)

C

calculate_statistics() (in module wings.analysis.stats) can_mate() (wings.models.cpu.beetle.Beetle method) cannibalism_rate (wings.models.gpu_abm.SimConfig attribute), [1] check_for_mating() (wings.models.cpu.environment.Environment method) check_infection_status() (wings.models.cpu.environment.Environment method) ci_strength (wings.models.cpu.parameters.ParameterSet attribute) (wings.models.gpu_abm.SimConfig attribute), [1]

combination_to_string() (in module wings.analysis.stats) combo_id() (in module wings.models.wfm) combo_label() (in module wings.analysis.plot_wings) (in module wings.models.wfm) compute_final_values() (in module wings.analysis.plot_wings) compute_time_to_fixation() (in module wings.analysis.plot_wings) compute_timeseries_stats() (in module wings.analysis.plot_wings)

D

detect_columns() (in module wings.analysis.plot_delta_p)

determine_offspring_count() (wings.models.cpu.reproduction.Reproduction method) device (wings.models.gpu_abm.SimConfig attribute), [1]

E

egg_hatching_age (wings.models.gpu_abm.SimConfig attribute) egg_laying_max (wings.models.cpu.reproduction.Reproduction attribute) (wings.models.gpu_abm.SimConfig attribute) eggs (wings.models.cpu.environment.Environment attribute) Environment (class in wings.models.cpu.environment)

environment (wings.models.cpu.beetle.Beetle attribute) (wings.models.cpu.reproduction.Reproduction attribute) exploration_rate_boost (wings.models.gpu_abm.SimConfig attribute) export_history_csv() (wings.models.gpu_abm.GPUSimulation method) extract_delta_p() (in module wings.analysis.plot_delta_p)

F

fecundity_decrease_factor (wings.models.cpu.parameters.ParameterSet attribute) (wings.models.gpu_abm.SimConfig attribute) fecundity_increase_factor (wings.models.cpu.parameters.ParameterSet attribute) (wings.models.gpu_abm.SimConfig attribute)

female_mating_interval (wings.models.cpu.parameters.ParameterSet attribute) filter_combos() (in module wings.analysis.plot_wings) filter_heatmap_configs() (in module wings.analysis.plot_wings) filter_subset_by_exclusion() (in module wings.analysis.plot_wings) fit_analytical() (in module wings.analysis.plot_delta_p)

G

generate_figures() (in module wings.analysis.plot_wings) generate_life_expectancy() (wings.models.cpu.beetle.Beetle method) generate_offspring() (wings.models.cpu.reproduction.Reproduction method) generate_position_in_central_third() (wings.models.cpu.environment.Environment method) get_infection_rate() (wings.models.gpu_abm.GPUSimulation method) get_nearby_position() (wings.models.cpu.reproduction.Reproduction method) get_ordered_labels() (in module wings.analysis.plot_wings) get_population_size() (wings.models.gpu_abm.GPUSimulation method)

get_sex_ratio() (wings.models.gpu_abm.GPUSimulation method) get_style() (in module wings.analysis.plot_wings) get_wolbachia_effects() (in module wings.analysis.stats) GPUSimulation (class in wings.models.gpu_abm) grid_size (wings.models.cpu.beetle.Beetle attribute) (wings.models.cpu.environment.Environment attribute) (wings.models.cpu.reproduction.Reproduction attribute) (wings.models.gpu_abm.SimConfig attribute), [1] grim_reaper() (wings.models.cpu.environment.Environment method)

I

infected (wings.models.cpu.beetle.Beetle attribute) infected_fraction (wings.models.cpu.environment.Environment attribute) (wings.models.gpu_abm.SimConfig attribute), [1] infected_male_advantage (wings.models.cpu.parameters.ParameterSet attribute) infection_history (wings.models.cpu.environment.Environment attribute) (wings.models.gpu_abm.GPUSimulation attribute)

initial_age_max (wings.models.gpu_abm.SimConfig attribute) initial_age_min (wings.models.gpu_abm.SimConfig attribute) initial_population (wings.models.gpu_abm.SimConfig attribute), [1] initialize_population() (wings.models.cpu.environment.Environment method) is_within_mating_distance() (wings.models.cpu.environment.Environment method)

K

keep() (wings.models.gpu_abm.PopulationState method)

L

last_mating_time (wings.models.cpu.beetle.Beetle attribute) levy_alpha (wings.models.gpu_abm.SimConfig attribute) levy_flight_step() (wings.models.cpu.beetle.Beetle method)

life_expectancy_max (wings.models.gpu_abm.SimConfig attribute) life_expectancy_min (wings.models.gpu_abm.SimConfig attribute) load_data() (in module wings.analysis.plot_wings)

M

main() (in module wings.analysis.ingest) (in module wings.analysis.ingest_delta_p) (in module wings.analysis.plot_delta_p) (in module wings.analysis.plot_wings) (in module wings.analysis.stats) (in module wings.models.wfm) make_filename() (in module wings.models.wfm) male_offspring_rate (wings.models.cpu.parameters.ParameterSet attribute) (wings.models.gpu_abm.SimConfig attribute) male_to_female_ratio (wings.models.gpu_abm.SimConfig attribute) mate() (wings.models.cpu.reproduction.Reproduction method) mating_backend (wings.models.gpu_abm.SimConfig attribute), [1] mating_cooldown (wings.models.cpu.beetle.Beetle attribute) mating_cooldown_female (wings.models.gpu_abm.SimConfig attribute) mating_cooldown_male (wings.models.gpu_abm.SimConfig attribute) mating_distance (wings.models.gpu_abm.SimConfig attribute) max_eggs (wings.models.cpu.environment.Environment attribute) (wings.models.gpu_abm.SimConfig attribute), [1] max_life_expectancy (wings.models.cpu.beetle.Beetle attribute) max_population (wings.models.cpu.environment.Environment attribute) (wings.models.gpu_abm.SimConfig attribute), [1] metric_fixation_pct() (in module wings.analysis.plot_wings) metric_median_final_infected() (in module wings.analysis.plot_wings)

metric_median_final_infection() (in module wings.analysis.plot_wings) metric_median_final_population() (in module wings.analysis.plot_wings) metric_median_time_to_fixation() (in module wings.analysis.plot_wings) model_ci_asymmetric() (in module wings.analysis.plot_delta_p) model_ci_er() (in module wings.analysis.plot_delta_p) model_er() (in module wings.analysis.plot_delta_p) module wings.analysis.ingest wings.analysis.ingest_delta_p wings.analysis.plot_delta_p wings.analysis.plot_wings wings.analysis.stats wings.models.cpu wings.models.cpu.beetle wings.models.cpu.environment wings.models.cpu.parameters wings.models.cpu.reproduction wings.models.gpu_abm wings.models.wfm mortality_beta (wings.models.gpu_abm.SimConfig attribute), [1] mortality_mode (wings.models.gpu_abm.SimConfig attribute), [1] move() (wings.models.cpu.beetle.Beetle method) multiple_mating (wings.models.gpu_abm.SimConfig attribute)

N

n (wings.models.gpu_abm.PopulationState property) n_adults (wings.models.gpu_abm.PopulationState property)

n_eggs (wings.models.gpu_abm.PopulationState property) normalise_columns() (in module wings.analysis.ingest)

P

ParameterSet (class in wings.models.cpu.parameters) parse_conditions_from_filename() (in module wings.analysis.ingest) parse_exclude() (in module wings.analysis.plot_wings) parse_filename() (in module wings.analysis.ingest_delta_p) plot_delta_p_figure() (in module wings.analysis.plot_delta_p) plot_final_infection() (in module wings.analysis.plot_wings) plot_final_strip() (in module wings.analysis.plot_wings) plot_heatmap() (in module wings.analysis.plot_wings)

plot_overlay_figure() (in module wings.analysis.plot_delta_p) plot_time_to_fixation() (in module wings.analysis.plot_wings) plot_timeseries() (in module wings.analysis.plot_wings) population (wings.models.cpu.environment.Environment attribute) population_history (wings.models.gpu_abm.GPUSimulation attribute) population_size (wings.models.cpu.environment.Environment attribute) PopulationState (class in wings.models.gpu_abm) position (wings.models.cpu.beetle.Beetle attribute)

R

raw_final_infected_count() (in module wings.analysis.plot_wings) raw_final_infection() (in module wings.analysis.plot_wings) raw_final_population() (in module wings.analysis.plot_wings) raw_fixation_binary() (in module wings.analysis.plot_wings) raw_time_to_fixation() (in module wings.analysis.plot_wings)

read_data() (in module wings.analysis.stats) Reproduction (class in wings.models.cpu.reproduction) retire_old_beetles() (wings.models.cpu.environment.Environment method) run_all() (in module wings.models.wfm) run_experiment() (in module wings.models.gpu_abm) run_simulation_step() (wings.models.cpu.environment.Environment method)

S

save_csv() (in module wings.models.wfm) save_fig() (in module wings.analysis.plot_delta_p) (in module wings.analysis.plot_wings) seed (wings.models.gpu_abm.SimConfig attribute), [1] sex (wings.models.cpu.beetle.Beetle attribute)

sim_time (wings.models.gpu_abm.GPUSimulation attribute) SimConfig (class in wings.models.gpu_abm) simulate() (in module wings.models.wfm) step() (wings.models.gpu_abm.GPUSimulation method) step_one_day() (wings.models.gpu_abm.GPUSimulation method) subsample() (wings.models.gpu_abm.PopulationState method)

U

update_last_mating_time() (wings.models.cpu.beetle.Beetle method)

update_population_arrays() (wings.models.cpu.environment.Environment method)

W

wings.analysis.ingest module wings.analysis.ingest_delta_p module wings.analysis.plot_delta_p module wings.analysis.plot_wings module wings.analysis.stats module wings.models.cpu module wings.models.cpu.beetle module

wings.models.cpu.environment module wings.models.cpu.parameters module wings.models.cpu.reproduction module wings.models.gpu_abm module wings.models.wfm module wolbachia_effects (wings.models.cpu.environment.Environment attribute) (wings.models.cpu.reproduction.Reproduction attribute) (wings.models.gpu_abm.SimConfig attribute), [1]