Quickstart

Running a single simulation

# GPU ABM: 50 beetles, 365 days, CI + ER enabled
wings-abm --population 50 --days 365 --ci --er --output result.csv

# Wright-Fisher model: 50 beetles, 12 generations, all 16 combos
wings-wfm --run-all --nreps 200

Batch runs on SLURM

# ABM: 16 combos × 200 reps at 10% initial infection
sbatch slurm/submit_abm.sh

# ABM: same at 50% initial infection
sbatch slurm/submit_abm_05.sh

# Δp frequency sweep (CI, ER, CI+ER × 19 fractions × 50 reps)
bash slurm/submit_delta_p.sh

Analysing results

# 1. Ingest raw CSVs into a combined dataset
wings-ingest --input-dir /path/to/results --output data/combined.csv

# 2. Generate publication figures
wings-plot --model abm --input data/combined.csv

# 3. Δp analysis
wings-ingest-dp --input-dir /path/to/delta_p_results --output data/combined_dp.csv
wings-plot-dp --input data/combined_dp.csv --dt 24 --mode compare