Contents
PathConfigError
active_profile()
active_profile_name()
configured_path()
data_root()
export_lines()
get()
get_path()
main()
profile()
WellDetector
split_plate_video()
VideoInfoExtractor
align_posture()
compute_com()
compute_frons()
compute_posture_dynamics()
compute_velocity()
compute_yaw()
correct_eye_positions()
extract_features()
interpolate_low_confidence()
px_per_frame_to_mm_per_s()
clean_features()
clean_features_from_array()
plot_feature_histograms()
compute_and_save_mu_sigma()
compute_mu_sigma()
de_z_score()
load_mu_sigma()
save_mu_sigma()
z_score()
calinski_harabasz()
leave_out()
make_output_paths()
meta_path()
run_kmeans()
ClusterMetaAnalysis
ClusterPlotter
write_results_to_jsonFile()
CentroidProcessor
compute_inertia()
compute_instability()
compute_silhouette_stratified()
gather_meta_metrics()
locate_elbow_kneedle()
parse_columns()
plot_selection()
plot_selection_metrics()
recompute_inertia_for_meta_dir()
selection_summary()
analyse_proportions()
assign_groups()
compute_trial_proportions()
group_summary()
proportions_long()
compare_cluster_proportions()
compare_groups()
permutation_test_proportions()
ClusterInfo
ClusterMap
identity_map()
map_from_dict()
thesis_k36_map()
TadpoleMarkovChain
plot_above_transitions()
plot_threshold_transitions()
plot_transition_matrix()
TadpoleMarkovChainGroupAnalysis
assign_clusters_from_numpy()
assign_new_data_to_clustering()
nearest_centroid()
normalise_and_assign()
add_clustering_labels()
apply_tadpose_style()
kinematic_label()
make_results_tree()
pm_category()
pm_label()
save_figure()
sig_letter()
sig_stars()
plot_centroid()
plot_centroid_grid()
plot_kinematics_cross()
plot_posture()
proportion_bars()
raincloud()
raincloud_grid()
raincloud_with_stats()
Base
BodyPart
Clustering
ClusteringFeatureStat
ClusteringRun
ClusteringRunTrial
ClusteringType
DatabaseHandler
ExperimentSeries
ExperimentType
ExperimentTypeAttribute
FrameCluster
FrameClusterProportion
Frog
Investigator
Posture
TadpoleGroup
TimeSeries
Trajectory
Trial
Velocity
Video
WellGeometry
WellType
WellTypeAttribute
FileManager
PlateManager
ExperimentManager
PresetManager
ResultManager
SlurmJobManager
TadpoleFrameExtractor
tadpose
tadpose.analysis.assign_new_data_to_clusters
tadpose.analysis.cluster_map
tadpose.analysis.generate_new_labelling
tadpose.analysis.internal_metrics
tadpose.analysis.markov_chain
tadpose.analysis.markov_chain_groups
tadpose.analysis.proportions
tadpose.analysis.stats
tadpose.analysis.viz_centroids
tadpose.analysis.viz_proportions
tadpose.centroid_matching
tadpose.cli
tadpose.cluster_meta
tadpose.clustering
tadpose.config
tadpose.database
tadpose.dlc_runner
tadpose.experiment_manager
tadpose.feature_cleaning
tadpose.feature_extraction
tadpose.file_manager
tadpose.frame_getter
tadpose.normalisation
tadpose.plate_manager
tadpose.preset_manager
tadpose.result_manager
tadpose.slurm_jobs
tadpose.video_info
tadpose.video_segmentation
tadpose.viz_constants
tadpose.well_detection