Quickstart

Note

Full quickstart lands in sprint 10. The placeholder below documents the intended user workflow so reviewers can sanity-check the reproducibility track at a glance.

Install

pip install arista-thermosensation
# or, from the Zenodo source bundle:
pip install -e .

Preprocess one recording on the shipped fixtures

arista-preprocess align \\
    data/fiji/HC01.csv \\
    data/sensor/temperature_data_2021_12_20-12_40.mat \\
    -o aligned.csv

arista-preprocess drift aligned.csv -o corrected.csv --method auto

Preprocess your own raw Ca²⁺ imaging data

arista-preprocess batch my_raw_data/ -o preprocessed/ \\
    --layout generic --method auto

Build the database and rebuild figures

arista-ingest --root preprocessed/ --db arista.db
arista-figs   --db arista.db --output figures/