Index

A

add_animal() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) add_behaviour() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) add_checkbox() (pyvisor.GUI.tab_behaviours.compatible_behaviour_widget.CompatibleBehaviourWidget method) add_compatibility() (pyvisor.GUI.tab_behaviours.compatible_behaviour_widget.CompatibleBehaviourWidget method) align() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.annotation_io) all_actions_have_buttons_assigned() (pyvisor.GUI.model.animal.Animal method) anaBoutDur() (pyvisor.analysis.analysis_online.analysis method) anaFrequency() (pyvisor.analysis.analysis_online.analysis method) analyse_ethogram() (in module pyvisor.analysis.ethogram_analysis) analysis (class in pyvisor.analysis.analysis_online) analysisOffLine (class in pyvisor.analysis.analysis_offline)

AnalysisResult (class in pyvisor.analysis.ethogram_analysis) anaPercentage() (pyvisor.analysis.analysis_online.analysis method) Animal (class in pyvisor.GUI.model.animal) ANIMAL_MOVIE (pyvisor.GUI.model.behaviour.Behaviour attribute) AnimalEthogram2 (class in pyvisor.animal_ethogram_2) apply_states_at_frame() (pyvisor.ethogram.Ethogram method) assign_behaviours() (pyvisor.animal_ethogram_2.AnimalEthogram2 method) assign_button() (pyvisor.GUI.tab_buttons.assign_button_box.AssignButtonBox method) AssignButtonBox (class in pyvisor.GUI.tab_buttons.assign_button_box) assignMatrix2animals() (pyvisor.dataIO.dataIO method) autosave() (pyvisor.dataIO.dataIO method) autosave_settings (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 property)

B

Behaviour (class in pyvisor.GUI.model.behaviour) behaviour_agreement() (in module pyvisor.analysis.reliability.report) behaviour_stats (pyvisor.analysis.ethogram_analysis.AnalysisResult attribute) behaviour_with_name_exists() (pyvisor.GUI.model.animal.Animal method) BehaviourAlreadyInCompatibilityListException BehaviourCheckbox (class in pyvisor.GUI.tab_behaviours.behaviour_checkbox) BehaviourNotInCompatibilityListException behaviours (pyvisor.analysis.reliability.annotation_io.RasterAnnotation property) (pyvisor.analysis.reliability.RasterAnnotation property) BehaviourStats (class in pyvisor.analysis.ethogram_analysis) bias (pyvisor.analysis.reliability.agreement.BlandAltman attribute) (pyvisor.analysis.reliability.BlandAltman attribute) bland_altman() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.agreement)

bland_altman_courtship_index (pyvisor.analysis.reliability.report.StudySummary attribute) BlandAltman (class in pyvisor.analysis.reliability) (class in pyvisor.analysis.reliability.agreement) bout_durations_s (pyvisor.analysis.ethogram_analysis.BehaviourStats attribute) bout_intervals_s (pyvisor.analysis.ethogram_analysis.BehaviourStats attribute) bout_mean_s (pyvisor.analysis.ethogram_analysis.BehaviourStats attribute) bout_statistics() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.measures) bout_std_s (pyvisor.analysis.ethogram_analysis.BehaviourStats attribute) BoutStatistics (class in pyvisor.analysis.reliability) (class in pyvisor.analysis.reliability.measures) button_assignment_changed() (pyvisor.GUI.tab_buttons.assign_button_box.AssignButtonBox method)

C

calcAllSequenceChanges() (pyvisor.analysis.analysis_online.analysis method) calculateSequenceIDX() (pyvisor.analysis.analysis_offline.analysisOffLine method) calculateTransProbs() (pyvisor.analysis.analysis_offline.analysisOffLine method) CallbackHandler (class in pyvisor.GUI.model.callback_handler) change_animal_name() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) change_behaviour_name() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) change_button_binding() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) checkingInputs() (pyvisor.GUI.tab_analysis.TabAnalysis method) clear() (pyvisor.GUI.model.callback_handler.CallbackHandler method) clear_all_callbacks() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) clear_states() (pyvisor.ethogram.Ethogram method) clearLayout() (pyvisor.GUI.tab_analysis.TabAnalysis method) clip_id (pyvisor.analysis.reliability.report.ClipComparison attribute) ClipComparison (class in pyvisor.analysis.reliability.report) close_event() (pyvisor.GUI.tab_analysis.TabAnalysis method) closeEvent() (pyvisor.GUI.tab_behaviours.behaviour_checkbox.BehaviourCheckbox method) (pyvisor.GUI.tab_behaviours.compatible_behaviour_widget.CompatibleBehaviourWidget method) (pyvisor.GUI.tab_buttons.assign_button_box.AssignButtonBox method) (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) cohen_kappa_binary() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.agreement)

cohen_kappa_multiclass() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.agreement) column() (pyvisor.analysis.reliability.annotation_io.RasterAnnotation method) (pyvisor.analysis.reliability.RasterAnnotation method) compatibility_toggled() (pyvisor.GUI.tab_behaviours.compatible_behaviour_widget.CompatibleBehaviourWidget method) CompatibleBehaviourWidget (class in pyvisor.GUI.tab_behaviours.compatible_behaviour_widget) computeExclusiveModulator() (pyvisor.analysis.analysis_offline.analysisOffLine method) computeInclusiveModulator() (pyvisor.analysis.analysis_offline.analysisOffLine method) computeNegativeModulator() (pyvisor.analysis.analysis_offline.analysisOffLine method) confusion_counts() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.agreement) ConfusionCounts (class in pyvisor.analysis.reliability) (class in pyvisor.analysis.reliability.agreement) copy_behaviours() (pyvisor.GUI.model.animal.Animal method) courtship_behaviours (pyvisor.analysis.reliability.report.ClipComparison attribute) courtship_index (pyvisor.analysis.reliability.report.StudySummary attribute) courtship_index() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.measures) courtship_index_pair() (in module pyvisor.analysis.reliability.report) createAnaOnObj() (pyvisor.analysis.analysis_offline.analysisOffLine method)

D

dataIO (class in pyvisor.dataIO) decall2icon() (pyvisor.icon.Icon method)

decrease_fps() (pyvisor.MediaHandler.MediaHandler method) delete_behaviours() (pyvisor.animal_ethogram_2.AnimalEthogram2 method) drawCircle() (pyvisor.icon.Icon method)

E

ensure_autosave_dir() (in module pyvisor.paths) ensure_extension() (in module pyvisor.paths) ensure_tmp_icon_dir() (in module pyvisor.paths) ensure_user_data_dir() (in module pyvisor.paths)

Ethogram (class in pyvisor.ethogram) exportData() (pyvisor.GUI.tab_analysis.TabAnalysis method) exportFrame() (pyvisor.GUI.tab_analysis.TabAnalysis method) exportMovie() (pyvisor.GUI.tab_analysis.TabAnalysis method)

F

f1 (pyvisor.analysis.reliability.agreement.PrecisionRecall attribute) (pyvisor.analysis.reliability.PrecisionRecall attribute) false_negative (pyvisor.analysis.reliability.agreement.ConfusionCounts attribute) (pyvisor.analysis.reliability.ConfusionCounts attribute) false_positive (pyvisor.analysis.reliability.agreement.ConfusionCounts attribute) (pyvisor.analysis.reliability.ConfusionCounts attribute) fps (pyvisor.analysis.ethogram_analysis.AnalysisResult attribute) (pyvisor.analysis.reliability.annotation_io.RasterAnnotation attribute) (pyvisor.analysis.reliability.RasterAnnotation attribute)

frequency_hz (pyvisor.analysis.ethogram_analysis.BehaviourStats attribute) from_dict() (pyvisor.GUI.model.behaviour.Behaviour static method) (pyvisor.GUI.model.key_bindings.KeyBindings static method) (pyvisor.GUI.model.movie_bindings.MovieBindings static method) from_json_dict() (pyvisor.GUI.model.animal.Animal static method) from_key_assignment_dictionary() (pyvisor.GUI.model.animal.Animal static method) from_object_dict_to_savable_dict() (pyvisor.GUI.model.behaviour.Behaviour static method) from_savable_dict_to_dict_of_objects() (pyvisor.GUI.model.behaviour.Behaviour static method)

G

get() (pyvisor.GUI.model.key_bindings.KeyBindings method) get_action_assigned_to() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) (pyvisor.GUI.model.movie_bindings.MovieBindings method) get_actions_without_buttons_assigned() (pyvisor.GUI.model.movie_bindings.MovieBindings method) get_active_labels_at_frame() (pyvisor.animal_ethogram_2.AnimalEthogram2 method) get_behaviour_assigned_to() (pyvisor.GUI.model.animal.Animal method) get_behaviours_without_buttons_assigned() (pyvisor.GUI.model.animal.Animal method) get_behaviours_without_icons() (pyvisor.GUI.model.animal.Animal method) (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) get_button_assignments() (pyvisor.GUI.model.animal.Animal method) (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) get_data() (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 method) get_formatted_behaviour_labels() (pyvisor.animal_ethogram_2.AnimalEthogram2 method) get_frame() (pyvisor.MediaHandler.MediaHandler method) get_frameNo() (pyvisor.MediaHandler.MediaHandler method) get_icons() (pyvisor.animal_ethogram_2.AnimalEthogram2 method) get_labels() (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 method)

get_savable_dict() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) get_savable_list() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) get_scorer_actions_without_buttons_assigned() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) get_time() (pyvisor.MediaHandler.MediaHandler method) get_unique_name() (pyvisor.GUI.model.animal.Animal method) getDataFromScorer() (pyvisor.analysis.analysis_online.analysis method) getDecallPos() (pyvisor.icon.Icon method) getFileName() (pyvisor.GUI.tab_analysis.TabAnalysis method) getFPS() (pyvisor.analysis.analysis_online.analysis method) getFrame() (pyvisor.MediaHandler.MediaHandler method) getFrameImage() (pyvisor.MediaHandler.MediaHandler method) getFrameMov() (pyvisor.MediaHandler.MediaHandler method) getFrameNorpix() (pyvisor.MediaHandler.MediaHandler method) getMaxDecallSize() (pyvisor.icon.Icon method) getSequenceChanges() (pyvisor.analysis.analysis_online.analysis method) go() (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 method) GUIDataInterface (class in pyvisor.GUI.model.gui_data_interface)

H

handle_input() (pyvisor.user_input_control.UserInputControl2 method)

has_behaviour() (pyvisor.GUI.model.animal.Animal method)

I

icc_2_1() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.agreement) icc_courtship_index (pyvisor.analysis.reliability.report.StudySummary attribute) Icon (class in pyvisor.icon) icon (pyvisor.GUI.model.behaviour.Behaviour property) icon2pygame() (pyvisor.icon.Icon method) icon_categories() (in module pyvisor.resources) icons_root() (in module pyvisor.resources)

image2surf() (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 static method) increase_fps() (pyvisor.MediaHandler.MediaHandler method) init_UI() (pyvisor.GUI.tab_analysis.TabAnalysis method) (pyvisor.GUI.tab_behaviours.behaviour_checkbox.BehaviourCheckbox method) (pyvisor.GUI.tab_behaviours.compatible_behaviour_widget.CompatibleBehaviourWidget method) invertDecall() (pyvisor.icon.Icon method) is_movie (pyvisor.GUI.model.behaviour.Behaviour property) items() (pyvisor.GUI.model.animal.Animal method) iter_resource_dirs() (in module pyvisor.resources)

K

key_is_assigned() (pyvisor.GUI.model.animal.Animal method) KeyBindings (class in pyvisor.GUI.model.key_bindings)

keys() (pyvisor.GUI.model.animal.Animal method) (pyvisor.GUI.model.movie_bindings.MovieBindings method)

L

label (pyvisor.analysis.ethogram_analysis.BehaviourStats attribute) (pyvisor.GUI.model.behaviour.Behaviour property) labels (pyvisor.analysis.ethogram_analysis.AnalysisResult attribute) (pyvisor.analysis.ethogram_analysis.TransitionResult attribute) latency_to_first() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.measures) loa_lower (pyvisor.analysis.reliability.agreement.BlandAltman attribute) (pyvisor.analysis.reliability.BlandAltman attribute) loa_upper (pyvisor.analysis.reliability.agreement.BlandAltman attribute) (pyvisor.analysis.reliability.BlandAltman attribute) load_boris_tabular() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.annotation_io)

load_gamethogram() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.annotation_io) load_movie() (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 method) loadData() (pyvisor.GUI.tab_analysis.TabAnalysis method) loadMAT() (pyvisor.dataIO.dataIO method) loadMedia() (pyvisor.GUI.tab_analysis.TabAnalysis method) loadPickle() (pyvisor.dataIO.dataIO method) loadTXT() (pyvisor.dataIO.dataIO method) loadXLSX() (pyvisor.dataIO.dataIO method) lock (pyvisor.ethogram.Ethogram property)

M

make_animal_behaviour_box() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_animals_box() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_behav_binding_info() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_device_choice() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_device_feature_info() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_joystick_info() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_joystick_info_initial() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_keyboard_info() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_movie_actions_box() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) make_selected_joystick_info() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) makeAutosaveRow() (pyvisor.GUI.tab_analysis.TabAnalysis method) makeBehavInfoBox() (pyvisor.GUI.tab_analysis.TabAnalysis method) makeBehaviourSummary() (pyvisor.GUI.tab_analysis.TabAnalysis method) makeCommandoRow() (pyvisor.GUI.tab_analysis.TabAnalysis method) makeMovieControlInfoBox() (pyvisor.GUI.tab_analysis.TabAnalysis method) makeMovieFileIO() (pyvisor.GUI.tab_analysis.TabAnalysis method) makeOverlayRow() (pyvisor.GUI.tab_analysis.TabAnalysis method) ManualEthologyScorer2 (class in pyvisor.manual_ethology_scorer_2) match_event_onsets() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.agreement) matrix (pyvisor.analysis.ethogram_analysis.TransitionResult attribute) matrix() (pyvisor.analysis.reliability.annotation_io.RasterAnnotation method) (pyvisor.analysis.reliability.RasterAnnotation method) mean_confidence_interval() (pyvisor.analysis.analysis_online.analysis method) mean_duration_s (pyvisor.analysis.reliability.BoutStatistics attribute) (pyvisor.analysis.reliability.measures.BoutStatistics attribute) MediaHandler (class in pyvisor.MediaHandler) module pyvisor, [1] pyvisor.analysis pyvisor.analysis.analysis_offline pyvisor.analysis.analysis_online pyvisor.analysis.ethogram_analysis pyvisor.analysis.reliability pyvisor.analysis.reliability.agreement pyvisor.analysis.reliability.annotation_io pyvisor.analysis.reliability.measures pyvisor.analysis.reliability.report pyvisor.animal_ethogram_2 pyvisor.dataIO pyvisor.ethogram pyvisor.exception pyvisor.exception.behaviour_already_in_compatibility_list_exception pyvisor.exception.behaviour_not_in_compatibility_list_exception pyvisor.GUI pyvisor.GUI.icon_gallery pyvisor.GUI.model pyvisor.GUI.model.animal pyvisor.GUI.model.behaviour pyvisor.GUI.model.callback_handler pyvisor.GUI.model.gui_data_interface pyvisor.GUI.model.key_bindings pyvisor.GUI.model.movie_bindings pyvisor.GUI.model.scorer_action pyvisor.GUI.styles pyvisor.GUI.tab_analysis pyvisor.GUI.tab_behaviours pyvisor.GUI.tab_behaviours.behaviour_checkbox pyvisor.GUI.tab_behaviours.compatible_behaviour_widget pyvisor.GUI.tab_buttons pyvisor.GUI.tab_buttons.assign_button_box pyvisor.GUI.tab_buttons.tab_buttons pyvisor.icon pyvisor.manual_ethology_scorer_2 pyvisor.MediaHandler pyvisor.paths pyvisor.resources pyvisor.user_input_control

MovieBindings (class in pyvisor.GUI.model.movie_bindings)

N

n (pyvisor.analysis.reliability.agreement.BlandAltman attribute) (pyvisor.analysis.reliability.BlandAltman attribute) n_bouts (pyvisor.analysis.reliability.BoutStatistics attribute) (pyvisor.analysis.reliability.measures.BoutStatistics attribute) n_frames (pyvisor.analysis.ethogram_analysis.AnalysisResult attribute) (pyvisor.analysis.reliability.agreement.ConfusionCounts property) (pyvisor.analysis.reliability.annotation_io.RasterAnnotation property) (pyvisor.analysis.reliability.ConfusionCounts property) (pyvisor.analysis.reliability.RasterAnnotation property)

name (pyvisor.GUI.model.scorer_action.ScorerAction property) NameExistsException NameIdenticalException

O

onset_frames() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.measures)

P

parse_label() (pyvisor.GUI.model.behaviour.Behaviour static method) pass_a (pyvisor.analysis.reliability.report.ClipComparison attribute) pass_b (pyvisor.analysis.reliability.report.ClipComparison attribute) per_animal_transitions (pyvisor.analysis.ethogram_analysis.AnalysisResult attribute) per_behaviour (pyvisor.analysis.reliability.report.StudySummary attribute) percent_agreement() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.agreement) percentage (pyvisor.analysis.ethogram_analysis.BehaviourStats attribute) plotBoutDur() (pyvisor.analysis.analysis_online.analysis method) plotFrequency() (pyvisor.analysis.analysis_online.analysis method) plotPercentage() (pyvisor.analysis.analysis_online.analysis method) pop() (pyvisor.GUI.model.callback_handler.CallbackHandler method) portable_icon_path() (in module pyvisor.resources) precision (pyvisor.analysis.reliability.agreement.PrecisionRecall attribute) (pyvisor.analysis.reliability.PrecisionRecall attribute) precision_recall_f1() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.agreement) PrecisionRecall (class in pyvisor.analysis.reliability) (class in pyvisor.analysis.reliability.agreement) proportion_active() (in module pyvisor.analysis.reliability) (in module pyvisor.analysis.reliability.measures) pyvisor module, [1] pyvisor.analysis module pyvisor.analysis.analysis_offline module pyvisor.analysis.analysis_online module pyvisor.analysis.ethogram_analysis module pyvisor.analysis.reliability module pyvisor.analysis.reliability.agreement module pyvisor.analysis.reliability.annotation_io module pyvisor.analysis.reliability.measures module pyvisor.analysis.reliability.report module pyvisor.animal_ethogram_2 module pyvisor.dataIO module pyvisor.ethogram module pyvisor.exception module pyvisor.exception.behaviour_already_in_compatibility_list_exception module

pyvisor.exception.behaviour_not_in_compatibility_list_exception module pyvisor.GUI module pyvisor.GUI.icon_gallery module pyvisor.GUI.model module pyvisor.GUI.model.animal module pyvisor.GUI.model.behaviour module pyvisor.GUI.model.callback_handler module pyvisor.GUI.model.gui_data_interface module pyvisor.GUI.model.key_bindings module pyvisor.GUI.model.movie_bindings module pyvisor.GUI.model.scorer_action module pyvisor.GUI.styles module pyvisor.GUI.tab_analysis module pyvisor.GUI.tab_behaviours module pyvisor.GUI.tab_behaviours.behaviour_checkbox module pyvisor.GUI.tab_behaviours.compatible_behaviour_widget module pyvisor.GUI.tab_buttons module pyvisor.GUI.tab_buttons.assign_button_box module pyvisor.GUI.tab_buttons.tab_buttons module pyvisor.icon module pyvisor.manual_ethology_scorer_2 module pyvisor.MediaHandler module pyvisor.paths module pyvisor.resources module pyvisor.user_input_control module

R

RasterAnnotation (class in pyvisor.analysis.reliability) (class in pyvisor.analysis.reliability.annotation_io) raw_data (pyvisor.analysis.ethogram_analysis.AnalysisResult attribute) readData() (pyvisor.analysis.analysis_offline.analysisOffLine method) readDataSingle() (pyvisor.analysis.analysis_offline.analysisOffLine method) readImage() (pyvisor.icon.Icon method) rearrange_checkboxes_with_larger_index() (pyvisor.GUI.tab_behaviours.compatible_behaviour_widget.CompatibleBehaviourWidget method) recall (pyvisor.analysis.reliability.agreement.PrecisionRecall attribute) (pyvisor.analysis.reliability.PrecisionRecall attribute) reduceSequenceIDX() (pyvisor.analysis.analysis_offline.analysisOffLine method) refresh_media() (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 method) register() (pyvisor.GUI.model.callback_handler.CallbackHandler method) register_callback_animal_added() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) register_callback_behaviour_added() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) register_callback_compatibility_changed() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) register_callback_key_binding_changed() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method)

remove() (pyvisor.GUI.tab_buttons.assign_button_box.AssignButtonBox method) remove_animal() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) remove_behaviour() (pyvisor.GUI.model.animal.Animal method) (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) remove_checkbox() (pyvisor.GUI.tab_behaviours.compatible_behaviour_widget.CompatibleBehaviourWidget method) remove_compatibility() (pyvisor.GUI.tab_behaviours.compatible_behaviour_widget.CompatibleBehaviourWidget method) rename_behaviour() (pyvisor.GUI.model.animal.Animal method) reset_all_bindings() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) resizeEvent() (pyvisor.GUI.tab_analysis.TabAnalysis method) (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) resolve_icon_path() (in module pyvisor.resources) resource_path() (in module pyvisor.resources) retrieveAnaOnResults() (pyvisor.analysis.analysis_offline.analysisOffLine method) runAnalysis() (pyvisor.analysis.analysis_offline.analysisOffLine method) (pyvisor.analysis.analysis_online.analysis method) runAnaOnAnalysis() (pyvisor.analysis.analysis_offline.analysisOffLine method) runScorer() (pyvisor.GUI.tab_analysis.TabAnalysis method)

S

save_data() (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 method) save_sidecar() (pyvisor.manual_ethology_scorer_2.ManualEthologyScorer2 method) save_state() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) saveAsMat() (pyvisor.dataIO.dataIO method) saveAsPy() (pyvisor.dataIO.dataIO method) saveAsTXT() (pyvisor.dataIO.dataIO method) saveAsXLSX() (pyvisor.dataIO.dataIO method) saveData() (pyvisor.GUI.tab_analysis.TabAnalysis method) saveDataMultiple() (pyvisor.analysis.analysis_offline.analysisOffLine method) saveDataSingle() (pyvisor.analysis.analysis_offline.analysisOffLine method) saveDataSingleMat() (pyvisor.analysis.analysis_offline.analysisOffLine method) saveDataSinglePkl() (pyvisor.analysis.analysis_offline.analysisOffLine method) saveDataSingleTxt() (pyvisor.analysis.analysis_offline.analysisOffLine method) saveDataSingleXlsx() (pyvisor.analysis.analysis_offline.analysisOffLine method) saveOverlayImage() (pyvisor.dataIO.dataIO method) saveOverlayMovie() (pyvisor.dataIO.dataIO method) ScorerAction (class in pyvisor.GUI.model.scorer_action) sd_diff (pyvisor.analysis.reliability.agreement.BlandAltman attribute) (pyvisor.analysis.reliability.BlandAltman attribute) sd_duration_s (pyvisor.analysis.reliability.BoutStatistics attribute) (pyvisor.analysis.reliability.measures.BoutStatistics attribute) set_assignDevice() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method)

set_color() (pyvisor.GUI.tab_buttons.assign_button_box.AssignButtonBox method) set_compatibility() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) set_current_frame_delta() (pyvisor.MediaHandler.MediaHandler method) set_device() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method) set_icon() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) set_icon_color() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) set_key_binding() (pyvisor.GUI.model.behaviour.Behaviour method) set_name() (pyvisor.GUI.model.scorer_action.ScorerAction method) set_run_forward() (pyvisor.MediaHandler.MediaHandler method) set_run_reverse() (pyvisor.MediaHandler.MediaHandler method) set_stop() (pyvisor.MediaHandler.MediaHandler method) setAnalysisWindow() (pyvisor.analysis.analysis_offline.analysisOffLine method) settings_path() (in module pyvisor.paths) source (pyvisor.analysis.reliability.annotation_io.RasterAnnotation attribute) (pyvisor.analysis.reliability.RasterAnnotation attribute) stats_to_dataframe() (in module pyvisor.analysis.ethogram_analysis) steal_button() (pyvisor.GUI.model.gui_data_interface.GUIDataInterface method) stop_autosave() (pyvisor.dataIO.dataIO method) StudySummary (class in pyvisor.analysis.reliability.report) subtractBehav() (pyvisor.analysis.analysis_offline.analysisOffLine method) summarise_study() (in module pyvisor.analysis.reliability.report) synchronizeBehaviourTabAndBindings() (pyvisor.GUI.tab_buttons.tab_buttons.TabButtons method)

T

TabAnalysis (class in pyvisor.GUI.tab_analysis) TabButtons (class in pyvisor.GUI.tab_buttons.tab_buttons) table (pyvisor.analysis.reliability.annotation_io.RasterAnnotation attribute) (pyvisor.analysis.reliability.RasterAnnotation attribute) title (pyvisor.analysis.ethogram_analysis.TransitionResult attribute) to_dict() (pyvisor.GUI.model.behaviour.Behaviour method) (pyvisor.GUI.model.key_bindings.KeyBindings method) (pyvisor.GUI.model.movie_bindings.MovieBindings method) to_numpy() (pyvisor.animal_ethogram_2.AnimalEthogram2 method) to_savable_dict() (pyvisor.GUI.model.animal.Animal method) toggle_play() (pyvisor.MediaHandler.MediaHandler method)

toggle_state() (pyvisor.ethogram.Ethogram method) total_frames (pyvisor.analysis.reliability.BoutStatistics attribute) (pyvisor.analysis.reliability.measures.BoutStatistics attribute) transition_labels (pyvisor.analysis.ethogram_analysis.AnalysisResult attribute) transition_matrix (pyvisor.analysis.ethogram_analysis.AnalysisResult attribute) transition_matrix_to_dataframe() (in module pyvisor.analysis.ethogram_analysis) TransitionResult (class in pyvisor.analysis.ethogram_analysis) true_negative (pyvisor.analysis.reliability.agreement.ConfusionCounts attribute) (pyvisor.analysis.reliability.ConfusionCounts attribute) true_positive (pyvisor.analysis.reliability.agreement.ConfusionCounts attribute) (pyvisor.analysis.reliability.ConfusionCounts attribute)

U

UserInputControl2 (class in pyvisor.user_input_control)

W

waitOnUICpress() (pyvisor.GUI.tab_buttons.assign_button_box.AssignButtonBox static method)

write_tables() (in module pyvisor.analysis.reliability.report) write_tmp_icon() (in module pyvisor.icon)